remove-indels from vcfvcftools
vcftools --max-missing
remove samples from vcf
extract genotype from vcf file
vcffilter vcflib
vcftools relatedness
vcf filter github

usage: vcffilter [options] options: -f, --info-filter specifies a filter to apply to the info fields of records, removes alleles which do not VcfFilter. This tool enables a user to filter VCF files. · Documentation. For documentation and manuals visit our github.io page. · About. VcfFilter is part of conda install -c bioconda/label/cf201901 biopet-vcffilter For documentation and manuals visit our github.io page: biopet.github.io/vcffilter.You can do exactly this with vcffilter in vcflib! Here's how to select all variants with depth greater than 10, mapping quality greater than 30,