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MUMmer's efficiency also makes it ideal for aligning huge sequences such as. MapView is a utility script for displaying sequence alignments as can be added or removed with the command line switches described in the manual. The manual page is currently here, though we plan to move it soon. If the species are too divergent for a DNA sequence alignment to detect similarity, MUMmer is a system for rapidly aligning large DNA sequences to one another. It can align: whole genomes to other genomes; large genome assemblies to one mummerplot is a perl script that generates gnuplot scripts and data collections for plotting with the gnuplot utility. It can generate 2-d dotplots and 1-d PROmer is a Perl script pipeline for the alignment of multiple somewhat divergent nucleotide sequences. It works exactly like NUCmer, but with a small twist. Hello, I run the mummer command for a pairwaise alignment mummer -s -mum refer.txt query.txt > refer_query.align. The result is: > query 1450 9370 21.

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