samtools view samtools github samtools citation samtools flagssamtools install samtools mpileup samtools sam to bam samtools index
The samtools index command creates a new index file that allows fast look-up of the data in a sorted SAM or BAM file. $ samtools index input_alignments_sorted.Manual pages. Documentation for BCFtools, SAMtools, and HTSlib's utilities is available by using man command on the command line. The manual pages for
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